We isolated RNA from highly purified sperm cells and used 17 putative paternal effect genes. My research focuses on the further analysis of one of these genes, K07A12.5. I used cDNA clones of K07A12.5 to generate DIG labeled sense and anti-sense probes using asymmetric PCR. The probes were used for in-situ hybridization in dissected male and hermaphrodite gonads. Individual dissected worms were fixed in paraformaldehyde, permeablized with a detergent and protenase K treatment, and allowed to hybridize for 36 hours at 48˚C. After washing, bound probes were detected using anti-DIG antibodies and the signal was amplified using Tryamide. The samples were mounted on agarose pads in Prolong-Gold mounting medium with DAPI for imaging and examination.
Preliminary data show that the gene K07A12.5 is sperm-specific given that it was isolated from purified sperm cells. In-situ hybridization was inconclusive and I am currently troubleshooting before conducting the protocol once again.